Dr Rui Pinto Borges
Lecturer in Statistics
PhD supervision
- Yari Cerruti
- Diogo Da Silva Ribeiro
Selected publications
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Open access
The rarity of mutations and the inflation of bacterial effective population sizes
Borges, R., 26 Jan 2025, (E-pub ahead of print) In: Methods in Ecology and Evolution. Early View, 11 p.Research output: Contribution to journal › Article › peer-review
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Open access
The patterns of codon usage between chordates and arthropods are different but co-evolving with mutational biases
Kotari, I., Kosiol, C. & Borges, R., May 2024, In: Molecular Biology and Evolution. 41, 5, 13 p., msae080.Research output: Contribution to journal › Article › peer-review
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Open access
Testing phylogenetic signal with categorical traits and tree uncertainty
Ribeiro, D., Borges, R., Rocha, A. P. & Antunes, A., 27 Jul 2023, In: Bioinformatics. 39, 7, 3 p., btad433.Research output: Contribution to journal › Article › peer-review
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Open access
Stability of SARS-CoV-2 phylogenies
Turakhia, Y., de Maio, N., Thornlow, B., Gozashti, L., Lanfear, R., Walker, C. R., Hinrichs, A. S., Fernandes, J. D., Borges, R., Slodkowicz, G., Weilguny, L., Haussler, D., Goldman, N. & Corbett-Detig, R., 18 Nov 2020, In: PLoS Genetics. 16, 11, e1009175.Research output: Contribution to journal › Article › peer-review
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The genetic diversity of two invasive sympatric bivalves (Corbicula fluminea and Dreissena polymorpha) from Lakes Garda and Maggiore, Northern Italy
Gomes, C., Mendes, T., Borges, R., Guarneri, I., Marchi, I., Guilhermino, L., Vasconcelos, V., Riccardi, N. & Antunes, A., Feb 2020, In: Journal of Great Lakes Research. 46, 1, p. 225-229 5 p.Research output: Contribution to journal › Article › peer-review
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Open access
Avian Binocularity and Adaptation to Nocturnal Environments: Genomic Insights from a Highly Derived Visual Phenotype
Borges, R., Fonseca, J., Gomes, C., Johnson, W. E., O'Brien, S. J., Zhang, G., Gilbert, M. T. P., Jarvis, E. D., Antunes, A. & Das, S., 1 Aug 2019, In: Genome Biology and Evolution. 11, 8, p. 2244-2255 12 p.Research output: Contribution to journal › Article › peer-review
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Open access
Benchmarking software tools for detecting and quantifying selection in evolve and resequencing studies
Vlachos, C., Burny, C., Pelizzola, M., Borges, R., Futschik, A., Kofler, R. & Schlötterer, C., 15 Aug 2019, In: Genome Biology. 20, 1, 169.Research output: Contribution to journal › Article › peer-review
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Open access
Measuring phylogenetic signal between categorical traits and phylogenies
Borges, R., Machado, J. P., Gomes, C., Rocha, A. P. & Antunes, A., 1 Jun 2019, In: Bioinformatics. 35, 11, p. 1862-1869 8 p., bty800.Research output: Contribution to journal › Article › peer-review
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Open access
Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments
Borges, R., Johnson, W. E., O'Brien, S. J., Gomes, C., Heesy, C. P. & Antunes, A., 5 Feb 2018, In: BMC Genomics. 19, 1, 121.Research output: Contribution to journal › Article › peer-review
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Open access
Low genetic diversity and high invasion success of Corbicula fluminea (Bivalvia, Corbiculidae) (Müller, 1774) in Portugal
Gomes, C., Sousa, R., Mendes, T., Borges, R., Vilares, P., Vasconcelos, V., Guilhermino, L. & Antunes, A., Jul 2016, In: PLoS ONE. 11, 7, e0158108.Research output: Contribution to journal › Article › peer-review
